GYDLE

Solutions for Genomics

Fr
June 2022
Patterns of genomic diversity and linkage disequilibrium across the disjunct range of the Australian forest tree Eucalyptus globulus.
Authors :  Butler JB, Freeman JS, Potts BM, Vaillancourt R, Kahrood HV, Ades PK, Rigault P, Tibbits J.
Tree Genetics and Genomes 2022 Jun 02;18,28.
doi: 10.1007/s11295-022-01558-7
July 2020
Nested whole-genome duplications coincide with diversification and high morphological disparity in Brassicaceae.
Authors :  Walden N, German DA, Wolf EM, Kiefer M, Rigault P, Huang XC, Kiefer C, Schmickl R, Franzke A, Neuffer B, Mummenhoff K, Koch MA.
Nature Communications 2020 Jul 30;11(1):3795.
doi: 10.1038/s41467-020-17605-7.
April 2020
The Genomics of Cannabis and Its Close Relatives.
Authors :  Kovalchuk I, Pellino M, Rigault P, van Velzen R, Ebersbach J, R Ashnest J, Mau M, Schranz ME, Alcorn J, Laprairie RB, McKay JK, Burbridge C, Schneider D, Vergara D, Kane NC, Sharbel TF.
Annu Rev Plant Biol. 2020 Mar 10;71.
doi: 10.1146/annurev-arplant-081519-040203.
August 2019
The large repertoire of conifer NLR resistance genes includes drought responsive and highly diversified RNLs.
Authors :  Van Ghelder C, Parent G, Rigault P, Prunier J, Giguère I, Caron S, Stival Sena J, Deslauriers A, Bousquet J, Esmenjaud D, MacKay J.
Scientific Reports 2019 Aug 12;9(1):11614.
doi: 10.1038/s41598-019-47950-7.
August 2018
Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome.
Authors :  Keeble-Gagnère G, Rigault P, Tibbits J, Pasam R, Hayden M, Forrest K, Frenkel Z, Korol A, Huang BE, Cavanagh C, Taylor J, Abrouk M, Sharpe A, Konkin D, Sourdille P, Darrier B, Choulet F, Bernard A, Rochfort S, Dimech A, Watson-Haigh N, Baumann U, Eckermann P, Fleury D, Juhasz A, Boisvert S, Nolin MA, Dolezel J, Simkova H, Toegelova H, Safar J, Luo MC, Camara F, Pfeifer M, Isdale D, Nyström-Persson J, Iwgsc, Koo DH, Tinning M, Cui D, Ru Z, Appels R.
Genome Biol. 2018 Aug 17;19(1):112.
doi: 10.1186/s13059-018-1475-4.
August 2018
Shifting the limits in wheat research and breeding using a fully annotated reference genome.
Authors :  International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Simkova H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhasz A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, BartoS J, Bellec A, Berges H, Dolezel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Simkova H, Singh K, Valarik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Dolezel J, Cihalikova J, Simkova H, Toegelova H, Vrana J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhasz A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Dolezel J, Cizkova J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Dolezel J, Simkova H, Cihalikova J, Kubalakova M, Safar J, Vrana J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Dolezel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, BartoS J, HoluSova K, Plihal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valarik M, Abrouk M, Balcarkova B, HoluSova K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Simkova H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelova H, Tulpova Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Simkova H, Small I, Spannagl M, Swarbreck D, Uauy C.
Science. 2018 Aug 17;361(6403). pii: eaar7191.
doi: 10.1126/science.aar7191. Epub 2018 Aug 16.
April 2018
Ginkgo biloba's footprint of dynamic Pleistocene history dates back only 390,000 years ago.
Authors : Hohmann N, Wolf EM, Rigault P, Zhou W, Kiefer M, Zhao Y, Fu CX, Koch MA.
BMC Genomics. 2018 Apr 27;19(1):299.
doi: 10.1186/s12864-018-4673-2.
March 2018
Expansion of the dehydrin gene family in the Pinaceae is associated with considerable structural diversity and drought-responsive expression.
Authors : Stival Sena J, Giguère I, Rigault P, Bousquet J, Mackay J.
Tree Physiol. 2018 Mar 1;38(3):442-456.
doi: 10.1093/treephys/tpx125.
April 2017
Medium term water deficit elicits distinct transcriptome responses in Eucalyptus species of contrasting environmental origin.
Authors :  Spokevicius AV, Tibbits J, Rigault P, Nolin MA, Müller C, Merchant A.
BMC Genomics. 2017 Apr 7;18(1):284.
doi: 10.1186/s12864-017-3664-z.
May 2015
Transcriptomic analysis of wheat near-isogenic lines identifies PM19-A1 and A2 as candidates for a major dormancy QTL.
Authors :  Barrero JM, Cavanagh C, Verbyla KL, Tibbits JF, Verbyla AP, Huang BE, Rosewarne GM, Stephen S, Wang P, Whan A, Rigault P, Hayden MJ, Gubler F.
Genome Biol. 2015 May 12;16:93.
doi: 10.1186/s13059-015-0665-6.
June 2014
The genome of Eucalyptus grandis.
Authors :  Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J.
Nature. 2014 Jun 19;510(7505):356-62.
doi: 10.1038/nature13308.
April 2014
Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.
Authors :  Stival Sena J, Giguère I, Boyle B, Rigault P, Birol I, Zuccolo A, Ritland K, Ritland C, Bohlmann J, Jones S, Bousquet J, Mackay J.
BMC Plant Biol. 2014 Apr 16;14:95.
doi: 10.1186/1471-2229-14-95.
December 2013
Chloroplast genome analysis of Australian eucalypts - Eucalyptus, Corymbia, Angophora, Allosyncarpia and Stockwellia (Myrtaceae).
Authors :  Bayly MJ, Rigault P, Spokevicius A, Ladiges PY, Ades PK, Anderson C, Bossinger G, Merchant A, Udovicic F, Woodrow IE, Tibbits J.
Mol Phylogenet Evol. 2013 Dec;69(3):704-16.
doi: 10.1016/j.ympev.2013.07.006.
March 2013
Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners.
Authors :  Pavy N, Gagnon F, Rigault P, Blais S, Deschênes A, Boyle B, Pelgas B, Deslauriers M, Clément S, Lavigne P, Lamothe M, Cooke JE, Jaramillo-Correa JP, Beaulieu J, Isabel N, Mackay J, Bousquet J.
Mol Ecol Resour. 2013 Mar;13(2):324-36.
doi: 10.1111/1755-0998.12062.
October 2012
A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers.
Authors :  Pavy N, Pelgas B, Laroche J, Rigault P, Isabel N, Bousquet J.
BMC Biology. 2012 Oct 26;10(1):8.
doi: 10.1186/1741-7007-10-84.
August 2012
Transcriptome profiling in conifers and the PiceaGenExpress database show patterns of diversification within gene families and interspecific conservation in vascular gene expression.
Authors :  Raherison E, Rigault P, Caron S, Poulin PL, Boyle B, Verta JP, Giguère I, Bomal C, Bohlmann J, Mackay J.
BMC Genomics. 2012 Aug 29;13(1):434.
doi: 10.1186/1471-2164-13-434.
August 2012
Development of a porcine (Sus scrofa) embryo-specific microarray: array annotation and validation.
Authors :  Tsoi S, Zhou C, Grant JR, Pasternak JA, Dobrinsky J, Rigault P, Nieminen J, Sirard MA, Robert C, Foxcroft GR, Dyck MK.
BMC Genomics. 2012 Aug 3;13:370.
doi: 10.1186/1471-2164-13-370.
September 2011
A white spruce gene catalog for conifer genome analyses.
Authors :  Rigault P, Boyle B, Lepage P, Cooke JE, Bousquet J, MacKay J.
Plant Physiol. 2011 Sep;157(1):14-28.
doi: 10.1104/pp.111.179663. Epub 2011 Jul 5.
September 2011
Combining resources to obtain a comprehensive survey of the bovine embryo transcriptome through deep sequencing and microarrays.
Authors :  Robert C, Nieminen J, Dufort I, Gagné D, Grant JR, Cagnone G, Plourde D, Nivet AL, Fournier É, Paquet É, Blazejczyk M, Rigault P, Juge N, Sirard MA.
Mol Reprod Dev. 2011 Sep;78(9):651-64.
doi: 10.1002/mrd.21364. Epub 2011 Aug 2.
May 2011
Association genetics of wood physical traits in the conifer white spruce and relationships with gene expression.
Authors :  Beaulieu J, Doerksen T, Boyle B, Clément S, Deslauriers M, Beauseigle S, Blais S, Poulin PL, Lenz P, Caron S, Rigault P, Bicho P, Bousquet J, Mackay J.
Genetics. 2011 May;188(1):197-214.
doi: 10.1534/genetics.110.125781. Epub 2011 Mar 8.
Authors :  Butler JB, Freeman JS, Potts BM, Vaillancourt R, Kahrood HV, Ades PK, Rigault P, Tibbits J.
Tree Genetics and Genomes 2022 Jun 02;18,28.
doi: 10.1007/s11295-022-01558-7
Authors :  Walden N, German DA, Wolf EM, Kiefer M, Rigault P, Huang XC, Kiefer C, Schmickl R, Franzke A, Neuffer B, Mummenhoff K, Koch MA.
Nature Communications 2020 Jul 30;11(1):3795.
doi: 10.1038/s41467-020-17605-7.
Authors :  Kovalchuk I, Pellino M, Rigault P, van Velzen R, Ebersbach J, R Ashnest J, Mau M, Schranz ME, Alcorn J, Laprairie RB, McKay JK, Burbridge C, Schneider D, Vergara D, Kane NC, Sharbel TF.
Annu Rev Plant Biol. 2020 Mar 10;71.
doi: 10.1146/annurev-arplant-081519-040203.
Authors :  Van Ghelder C, Parent G, Rigault P, Prunier J, Giguère I, Caron S, Stival Sena J, Deslauriers A, Bousquet J, Esmenjaud D, MacKay J.
Scientific Reports 2019 Aug 12;9(1):11614.
doi: 10.1038/s41598-019-47950-7.
Authors :  Keeble-Gagnère G, Rigault P, Tibbits J, Pasam R, Hayden M, Forrest K, Frenkel Z, Korol A, Huang BE, Cavanagh C, Taylor J, Abrouk M, Sharpe A, Konkin D, Sourdille P, Darrier B, Choulet F, Bernard A, Rochfort S, Dimech A, Watson-Haigh N, Baumann U, Eckermann P, Fleury D, Juhasz A, Boisvert S, Nolin MA, Dolezel J, Simkova H, Toegelova H, Safar J, Luo MC, Camara F, Pfeifer M, Isdale D, Nyström-Persson J, Iwgsc, Koo DH, Tinning M, Cui D, Ru Z, Appels R.
Genome Biol. 2018 Aug 17;19(1):112.
doi: 10.1186/s13059-018-1475-4.
Authors :  International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Simkova H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhasz A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, BartoS J, Bellec A, Berges H, Dolezel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Simkova H, Singh K, Valarik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Dolezel J, Cihalikova J, Simkova H, Toegelova H, Vrana J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhasz A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Dolezel J, Cizkova J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Dolezel J, Simkova H, Cihalikova J, Kubalakova M, Safar J, Vrana J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Dolezel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, BartoS J, HoluSova K, Plihal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valarik M, Abrouk M, Balcarkova B, HoluSova K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Simkova H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelova H, Tulpova Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Simkova H, Small I, Spannagl M, Swarbreck D, Uauy C.
Science. 2018 Aug 17;361(6403). pii: eaar7191.
doi: 10.1126/science.aar7191. Epub 2018 Aug 16.
Authors : Hohmann N, Wolf EM, Rigault P, Zhou W, Kiefer M, Zhao Y, Fu CX, Koch MA.
BMC Genomics. 2018 Apr 27;19(1):299.
doi: 10.1186/s12864-018-4673-2.
Authors : Stival Sena J, Giguère I, Rigault P, Bousquet J, Mackay J.
Tree Physiol. 2018 Mar 1;38(3):442-456.
doi: 10.1093/treephys/tpx125.
Authors :  Spokevicius AV, Tibbits J, Rigault P, Nolin MA, Müller C, Merchant A.
BMC Genomics. 2017 Apr 7;18(1):284.
doi: 10.1186/s12864-017-3664-z.
Authors :  Barrero JM, Cavanagh C, Verbyla KL, Tibbits JF, Verbyla AP, Huang BE, Rosewarne GM, Stephen S, Wang P, Whan A, Rigault P, Hayden MJ, Gubler F.
Genome Biol. 2015 May 12;16:93.
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Nature. 2014 Jun 19;510(7505):356-62.
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Authors :  Stival Sena J, Giguère I, Boyle B, Rigault P, Birol I, Zuccolo A, Ritland K, Ritland C, Bohlmann J, Jones S, Bousquet J, Mackay J.
BMC Plant Biol. 2014 Apr 16;14:95.
doi: 10.1186/1471-2229-14-95.
Authors :  Bayly MJ, Rigault P, Spokevicius A, Ladiges PY, Ades PK, Anderson C, Bossinger G, Merchant A, Udovicic F, Woodrow IE, Tibbits J.
Mol Phylogenet Evol. 2013 Dec;69(3):704-16.
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Mol Ecol Resour. 2013 Mar;13(2):324-36.
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BMC Biology. 2012 Oct 26;10(1):8.
doi: 10.1186/1741-7007-10-84.
Authors :  Raherison E, Rigault P, Caron S, Poulin PL, Boyle B, Verta JP, Giguère I, Bomal C, Bohlmann J, Mackay J.
BMC Genomics. 2012 Aug 29;13(1):434.
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BMC Genomics. 2012 Aug 3;13:370.
doi: 10.1186/1471-2164-13-370.
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Plant Physiol. 2011 Sep;157(1):14-28.
doi: 10.1104/pp.111.179663. Epub 2011 Jul 5.
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Mol Reprod Dev. 2011 Sep;78(9):651-64.
doi: 10.1002/mrd.21364. Epub 2011 Aug 2.
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Genetics. 2011 May;188(1):197-214.
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